taxon	lfc_(Intercept)	lfc_GroupDay 15 Microbiome Only	se_(Intercept)	se_GroupDay 15 Microbiome Only	W_(Intercept)	W_GroupDay 15 Microbiome Only	p_(Intercept)	p_GroupDay 15 Microbiome Only	q_(Intercept)	q_GroupDay 15 Microbiome Only	diff_(Intercept)	diff_GroupDay 15 Microbiome Only
Capnocytophaga sputigena (SP103) 	0.174733246022969	-0.34807696589182	0.159611193588276	0.229082120389235	1.09474305714235	-1.51944187220024	0.273629219459822	0.128651309002853	1	1	FALSE	FALSE
Streptococcus oralis_subsp._tigurinus_clade_070 (SP105) 	0.196959017807771	-0.392528509461424	0.168562853783508	0.241713031010409	1.16846038962258	-1.62394434350757	0.242621107888327	0.104387687459853	1	1	FALSE	FALSE
Streptococcus cristatus_clade_578 (SP107) 	0.164969090083003	-0.328548654011887	0.100684811877283	0.14583983644856	1.63847046051067	-2.25280459723892	0.101323591233343	0.0242714722103684	1	1	FALSE	FALSE
Porphyromonas gingivalis (SP111) 	-0.288372401558784	0.578134329271686	0.224722930338424	0.320978396083161	-1.28323532059904	1.8011627459248	0.19940964504084	0.0716772323135251	1	1	FALSE	FALSE
Dialister invisus (SP112) 	0.265148867385412	-0.528908208616706	0.303741941521039	0.432575519833379	0.872941241033867	-1.22269565513192	0.382695105817375	0.221444668653851	1	1	FALSE	FALSE
Slackia exigua (SP119) 	-0.106803342305459	0.214996210765035	0.15335314271163	0.220252123615598	-0.696453560826565	0.976136834622601	0.486144830336729	0.328996659944379	1	1	FALSE	FALSE
Peptostreptococcaceae_[XI][G-7] [Eubacterium]_yurii_subsps._yurii_&_margaretiae (SP12) 	0.107086001960172	-0.212782477766226	0.217025774068978	0.310111822466757	0.493425273654992	-0.686147584034902	0.621712128088638	0.492620047165007	1	1	FALSE	FALSE
Fusobacterium periodonticum (SP121) 	0.159877390905269	-0.31836525565642	0.134577007457537	0.193756939914864	1.18799930185485	-1.64311665840877	0.234833684749884	0.100358798856323	1	1	FALSE	FALSE
Gemella morbillorum (SP123) 	0.00227754439892268	-0.00316556264372767	0.0974426277491471	0.141232862231104	0.0233731832929005	-0.0224137824138107	0.981352595793096	0.98211788633771	1	1	FALSE	FALSE
Aggregatibacter sp._HMT_512 (SP124) 	-0.199129532947668	0.399648592049454	0.335992947945919	0.478139438492734	-0.592659858384051	0.835841095453847	0.553408810830649	0.403244303956197	1	1	FALSE	FALSE
Arachnia propionica (SP125) 	-0.518413934536976	1.03821739522807	0.644516733524799	0.914229727395698	-0.804345190080358	1.13561981646076	0.421197645937735	0.256115711685739	1	1	FALSE	FALSE
Schaalia sp._HMT_180 (SP129) 	0.064411685349599	-0.127433844545079	0.225168993632646	0.321608157710006	0.28605930288379	-0.396239465604558	0.774832701210634	0.691928379521941	1	1	FALSE	FALSE
Prevotella sp._HMT_317 (SP13) 	-0.0704740672299624	0.142337660614043	0.11300867378758	0.163294736454315	-0.623616443481421	0.87166104495882	0.532879509024514	0.383393317633207	1	1	FALSE	FALSE
Streptococcus sp._HMT_423 (SP130) 	-0.163251587025275	0.327892700204669	0.180527619703745	0.258596664087355	-0.90430255100676	1.26796956705484	0.365834994481121	0.204808818770536	1	1	FALSE	FALSE
Streptococcus salivarius (SP131) 	0.258495026899216	-0.515600527644313	0.324590323597626	0.462029070752514	0.79637317599047	-1.11594823850488	0.425815164506246	0.264444291663675	1	1	FALSE	FALSE
Actinomyces sp._HMT_169 (SP138) 	0.589290265173852	-1.17719100419359	0.943494615836598	1.33696166289761	0.624582541630434	-0.880497202621541	0.532245080921511	0.378590019927362	1	1	FALSE	FALSE
Streptococcus oralis (SP140) 	0.124340268813273	-0.247291011472429	0.141960334775589	0.204176513251402	0.875880357776204	-1.2111628685124	0.381095078747134	0.225832990504786	1	1	FALSE	FALSE
Ottowia sp._HMT_894 (SP141) 	-1.00804604254239	2.0174816112389	0.495659472819791	0.703792190405337	-2.03374715468999	2.86658709593945	0.0419770951264352	0.00414923970519328	1	0.369282333762202	FALSE	FALSE
Tannerella forsythia (SP142) 	-0.274387901816606	0.55016532978733	0.367436021292263	0.522568399757053	-0.746763751827028	1.05281017765924	0.455206179616966	0.292427999435086	1	1	FALSE	FALSE
Porphyromonas endodontalis (SP149) 	-0.241890995762126	0.48517151767837	0.153064816035971	0.219845299363005	-1.58031742386362	2.20687692247294	0.114034191590356	0.0273226591033368	1	1	FALSE	FALSE
Prevotella oris (SP154) 	0.602807070491421	-1.20422461482872	0.863856085641645	1.22435330832611	0.697809601056031	-0.983559734465127	0.48529627396176	0.325332031244154	1	1	FALSE	FALSE
Fretibacterium fastidiosum (SP162) 	-0.312918921436248	0.627227369026614	0.296896936005884	0.422905979328382	-1.05396480558508	1.48313667738327	0.291899030620432	0.13803810102849	1	1	FALSE	FALSE
Solobacterium moorei (SP164) 	-0.11274512114678	0.226879768447677	0.202421182565826	0.289495905192979	-0.556982820264455	0.783706312862831	0.577539167049602	0.433212457464686	1	1	FALSE	FALSE
Porphyromonas pasteri (SP17) 	-0.518413934536976	1.03821739522807	0.470973299757859	0.668897961382244	-1.10072892625443	1.55213119962669	0.271014652871372	0.120630834063442	1	1	FALSE	FALSE
Prevotella sp._HMT_300 (SP172) 	0.685753499889896	-1.37011747362567	0.480626299967938	0.682542414771951	1.42679145925981	-2.00737337925505	0.153640013714161	0.0447099211586837	1	1	FALSE	FALSE
Porphyromonas catoniae (SP18) 	-0.189407643218642	0.380204812591403	0.42601058360002	0.605347098682944	-0.444607834899418	0.628077368205144	0.656603184444511	0.529953258117193	1	1	FALSE	FALSE
Eikenella corrodens (SP185) 	-0.147631119842472	0.296651765839062	0.2775009110349	0.395508569938995	-0.532002288900252	0.750051423373252	0.594724410213852	0.453223734345832	1	1	FALSE	FALSE
Actinomyces johnsonii (SP189) 	0.102812727910024	-0.20423592966593	0.258759532776746	0.369039347865323	0.397329237716352	-0.55342589034832	0.691124689559128	0.5799718144617	1	1	FALSE	FALSE
Abiotrophia defectiva (SP190) 	0.370517795744637	-0.739646065335155	0.318083141874841	0.452835703369646	1.16484574932433	-1.63336516937886	0.244081436518823	0.10239221796718	1	1	FALSE	FALSE
Streptococcus chosunense (SP191) 	-0.0773858367026628	0.156161199559443	0.341501860751777	0.485923091831152	-0.226604436451113	0.321370196610672	0.820731342240669	0.747929865874549	1	1	FALSE	FALSE
Streptococcus oralis_subsp._dentisani_clade_058 (SP192) 	-0.147307977863602	0.296005481881322	0.164570300991213	0.236079417875179	-0.895106692862321	1.25383857917604	0.370730056538654	0.20990068353647	1	1	FALSE	FALSE
Schaalia odontolytica (SP198) 	-0.338084420155316	0.677558366464749	0.501684097252336	0.712308307848363	-0.67389901734371	0.951215027256132	0.50037551690668	0.341495231587028	1	1	FALSE	FALSE
Veillonella dispar (SP20) 	0.41506320812624	-0.828736890098362	0.130963044526682	0.188655955721237	3.16931550901504	-4.39284774726606	0.00152798428686029	1.11875478459579e-05	0.148214475825448	0.00108519214105792	FALSE	TRUE
Rothia aeria (SP205) 	0.724039390357024	-1.44668925455993	0.159611193588276	0.229082120389235	4.53626950641518	-6.31515568348088	5.72580027556658e-06	2.69889641164179e-10	0.000561128427005525	2.64491848340896e-08	TRUE	TRUE
Bacteroides heparinolyticus (SP208) 	0.00214130725684036	-0.00289308835956347	0.125136887572915	0.18043065700503	0.017111719001263	-0.0160343503015833	0.986347489870705	0.987206987635621	1	1	FALSE	FALSE
Parvimonas micra (SP214) 	-0.0278645125256687	0.0571185512054559	0.163617268600986	0.234734678545617	-0.170303005079629	0.243332393659746	0.864771848073168	0.807747911867834	1	1	FALSE	FALSE
Fretibacterium sp._HMT_360 (SP23) 	-0.237934690541068	0.477258907236255	0.123824790877454	0.178577831492655	-1.92154324554075	2.67255405246583	0.054663255831309	0.00752762461080066	1	0.662430965750458	FALSE	FALSE
Filifactor alocis (SP234) 	-0.0744586443627281	0.150306814879574	0.417504181086245	0.59332480599918	-0.178342272331273	0.25332973332617	0.85845418238823	0.800013421422048	1	1	FALSE	FALSE
Schaalia cardiffensis (SP247) 	-0.655071944569078	1.31153341529227	0.423247296623797	0.601441653010897	-1.54772859695626	2.18064945905652	0.121687653976793	0.0292093539338365	1	1	FALSE	FALSE
Streptococcus constellatus (SP252) 	-0.122351297602032	0.246092121358183	0.127598908314099	0.183906846624821	-0.958874172346764	1.33813463650009	0.337622137438114	0.180852551677399	1	1	FALSE	FALSE
Schaalia sp._HMT_178 (SP255) 	-0.0704740672299626	0.142337660614043	0.704025409509119	0.9983649825934	-0.100101596161281	0.142570766298614	0.920263668145736	0.886629186694612	1	1	FALSE	FALSE
Peptostreptococcus stomatis (SP256) 	0.321780774826623	-0.642172023499129	0.107437545858078	0.155412159529232	2.99504956350816	-4.13205778392354	0.0027440025008074	3.59530004357281e-05	0.26342424007751	0.0034514880418299	FALSE	TRUE
Aggregatibacter segnis (SP26) 	-0.340163605599546	0.68171673735321	0.136931265323303	0.197079549337786	-2.48419237780649	3.45909425733857	0.0129845640323916	0.000541995196074456	1	0.0509475484309989	FALSE	FALSE
Streptococcus sp._HMT_064 (SP262) 	0.108123458664934	-0.214857391175751	0.318941292337092	0.454048083751376	0.339007401245048	-0.473204047907403	0.734604154590009	0.636067610107383	1	1	FALSE	FALSE
Gemella haemolysans (SP265) 	-0.171840344257004	0.345070214668125	0.159611193588276	0.229082120389235	-1.076618377407	1.50631666095029	0.281650790669358	0.131985903107409	1	1	FALSE	FALSE
Prevotella buccae (SP269) 	0.284054015463048	-0.566718504771979	0.122268227395983	0.176379540923974	2.32320384054559	-3.21306259106465	0.0201682045629604	0.00131327666408225	1	0.118194899767403	FALSE	FALSE
Streptococcus anginosus (SP271) 	-0.140024899354271	0.281439324862661	0.266423533731443	0.379863088819461	-0.525572562577814	0.740896741869074	0.599185224435958	0.45875605115306	1	1	FALSE	FALSE
Saccharibacteria_(TM7)_[G-1] bacterium_HMT_957 (SP277) 	0.61104310942126	-1.2206966926884	0.860104304987321	1.21904839115201	0.710429079215302	-1.00135212149768	0.477438095866861	0.316656602604668	1	1	FALSE	FALSE
Serratia marcescens (SP278) 	-0.46990304868432	0.941195623522759	0.361695534347718	0.514456693134384	-1.2991674047946	1.82949436965903	0.193886484963962	0.0673255820085821	1	1	FALSE	FALSE
Neisseria flava (SP28) 	-0.181208368957078	0.363806264068275	0.104381380839816	0.151082963485554	-1.73602195620655	2.4079899922208	0.0825599524038274	0.0160406207283828	1	1	FALSE	FALSE
Peptostreptococcaceae_[XI][G-1] [Eubacterium]_infirmum (SP284) 	0.126674564710814	-0.25195960326751	0.108991977238786	0.157612563436734	1.16223751435656	-1.59860101107135	0.245139000273409	0.109909284941858	1	1	FALSE	FALSE
Neisseria subflava (SP286) 	0.151894428796093	-0.302399331438068	0.115916011289394	0.16740488534619	1.31038350186909	-1.80639490187345	0.190066131979206	0.0708566773513017	1	1	FALSE	FALSE
Streptococcus gordonii (SP289) 	0.354034987214273	-0.706680448274428	0.239172830614471	0.341380424008169	1.48024751099322	-2.0700672873308	0.138807205354858	0.0384460437535478	1	1	FALSE	FALSE
Enterobacter cloacae (SP29) 	-0.807756614724902	1.61690275560392	0.641370454234733	0.90978152648312	-1.25942286457317	1.77724289682411	0.207877635125463	0.0755282843806775	1	1	FALSE	FALSE
Neisseria flavescens (SP294) 	0.184938744653033	-0.368487963151947	0.338757480305658	0.482045477747285	0.545932578333516	-0.764425723635	0.585112283231714	0.444613584222553	1	1	FALSE	FALSE
Saccharibacteria_(TM7)_[G-4] bacterium_HMT_355 (SP295) 	0.336223003948513	-0.671056481742907	0.315472680390876	0.449147720911498	1.06577534235905	-1.4940663182729	0.286525209856302	0.135158286374093	1	1	FALSE	FALSE
Neisseria sicca (SP296) 	-0.216057668510006	0.43350486317413	0.113341706793884	0.163765651783129	-1.90625035233424	2.64710492373706	0.0566177322531821	0.00811841595543209	1	0.706302188122592	FALSE	FALSE
Cardiobacterium valvarum (SP297) 	0.331885410878563	-0.662381295603007	0.580259718071966	0.823385921324205	0.571960107762299	-0.804460312532108	0.567349000935562	0.421131181095896	1	1	FALSE	FALSE
Fusobacterium nucleatum_subsp._animalis (SP3) 	0.857918949446114	-1.71444837273811	1.32302596795289	1.87364448624822	0.64845208652523	-0.915033980737253	0.516692590920636	0.36017379135276	1	1	FALSE	FALSE
Alloprevotella tannerae (SP32) 	0.292739714679595	-0.584089903205072	0.266408387383275	0.379841697262521	1.09883820684083	-1.53771928520367	0.271838643708358	0.124117266195402	1	1	FALSE	FALSE
Streptococcus oralis_subsp._tigurinus_clade_071 (SP330) 	0.440648947832999	-0.87990836951188	0.359920554606168	0.51194855922285	1.2242950345394	-1.71874371684453	0.220840949427051	0.0856610479823466	1	1	FALSE	FALSE
Streptococcus sp._HMT_056 (SP334) 	-0.0704740672299622	0.142337660614043	0.815365666988479	1.15578976106288	-0.0864324683798074	0.123151861531588	0.931122637462542	0.901986844236394	1	1	FALSE	FALSE
Bacteroidales_[G-2] bacterium_HMT_274 (SP34) 	0.246580836176395	-0.491772146198671	0.172920974718717	0.247862641879312	1.42597412822532	-1.98405109567953	0.153875810164613	0.0472501441267913	1	1	FALSE	FALSE
Leptotrichia sp._HMT_392 (SP35) 	0.377465800077051	-0.753542073999985	0.6445167335248	0.914229727395699	0.585657098478619	-0.824237116142074	0.55810596956127	0.409804841400652	1	1	FALSE	FALSE
Peptostreptococcaceae_[XI][G-9] [Eubacterium]_brachy (SP359) 	-0.0500022773619164	0.101394080877951	0.477020708043114	0.677445904546597	-0.104822026630754	0.149671110560203	0.916517031609378	0.881024101827771	1	1	FALSE	FALSE
Prevotella nigrescens (SP36) 	0.0508343654049068	-0.100279204655695	0.163244035592037	0.234208044268072	0.311401058057318	-0.428162939360514	0.755495749649928	0.668532496263222	1	1	FALSE	FALSE
Rothia dentocariosa (SP366) 	-0.472833545338488	0.947056616831093	0.580259718071966	0.823385921324205	-0.814865362202939	1.15019772904059	0.415149382017102	0.250062441371617	1	1	FALSE	FALSE
Centipeda periodontii (SP37) 	-0.00375433102445782	0.00889818820303401	0.414275919078969	0.588762300569534	-0.00906239260250648	0.0151133797025156	0.992769355830465	0.987941726722459	1	1	FALSE	FALSE
Actinomyces naeslundii (SP38) 	0.323410022959642	-0.645430519765167	1.35862387192304	1.92398385344408	0.238042352738789	-0.335465663399303	0.811848245419409	0.737273842207387	1	1	FALSE	FALSE
Streptococcus intermedius (SP384) 	0.377465800077051	-0.753542073999985	0.644516733524799	0.914229727395698	0.585657098478619	-0.824237116142074	0.55810596956127	0.409804841400652	1	1	FALSE	FALSE
Peptoanaerobacter stomatis (SP387) 	-0.078166981896651	0.15772348994742	0.532068810349746	0.755259912109952	-0.146911415170661	0.208833392873709	0.883201941686848	0.834578302281108	1	1	FALSE	FALSE
Neisseria elongata (SP45) 	-0.393302804993688	0.787995136141496	0.466346827967258	0.662358564117841	-0.84336974416239	1.18968060327111	0.399021687744418	0.234171951913095	1	1	FALSE	FALSE
Treponema maltophilum (SP46) 	-0.421188279136716	0.843766084427549	0.144461326615864	0.207705641781736	-2.91557809279084	4.06231663805361	0.00355030244270328	4.85881099066797e-05	0.337278732056812	0.00461587044113457	FALSE	TRUE
Selenomonas infelix (SP49) 	0.330662914555015	-0.659936302955912	0.140271666967778	0.201793568105519	2.35730366440268	-3.27035350606827	0.018408186750481	0.00107413160803127	1	0.0988201079388771	FALSE	FALSE
Fusobacterium nucleatum_subsp._vincentii (SP54) 	-0.325210005435268	0.651809537024653	0.35706180421186	0.507909040210273	-0.910794718446858	1.28331942419219	0.362403545839457	0.19938019022181	1	1	FALSE	FALSE
Leptotrichia sp._HMT_215 (SP57) 	0.27609952305001	-0.550809519945902	0.501684222438714	0.71230848480666	0.550345238500576	-0.773273843699064	0.582082601216838	0.439360332119676	1	1	FALSE	FALSE
Streptococcus downii (SP58) 	0.331398064843646	-0.661406603533172	0.142555438046434	0.205016270262486	2.32469605779403	-3.22611762806123	0.0200882182324408	0.00125481774706789	1	0.114188414983178	FALSE	FALSE
Treponema denticola (SP60) 	0.0214571278013671	-0.0415247294486158	0.284038864550058	0.404743220851055	0.0755429290824584	-0.102595243871662	0.939782742626285	0.918284217761958	1	1	FALSE	FALSE
Veillonella parvula (SP63) 	0.378456766298114	-0.755524006442108	0.201842569473217	0.288679196183103	1.87500965374072	-2.61717510798005	0.0607913954527989	0.00886608453729026	1	0.762483270206962	FALSE	FALSE
Lautropia mirabilis (SP64) 	-0.0685936963955274	0.138576918945172	0.1877990379092	0.268858340474497	-0.365250520765139	0.515427264412193	0.714924409310551	0.606254484415162	1	1	FALSE	FALSE
Fusobacterium nucleatum (SP7) 	-0.29601062335196	0.593410772858038	0.580430997452085	0.82362806083775	-0.509984174951642	0.720483918741735	0.610062548611614	0.471227097480974	1	1	FALSE	FALSE
Lachnoanaerobaculum umeaense (SP70) 	-0.233555363739885	0.468500253633888	1.7898459923462	2.53379086536707	-0.130489083831023	0.184900916661099	0.89617949014108	0.8533067519974	1	1	FALSE	FALSE
Haemophilus parainfluenzae (SP72) 	0.0252739958340639	-0.0491584655140098	1.46292377836892	2.07147643650267	0.0172763586235798	-0.0237311246450891	0.986216145874484	0.981067079115633	1	1	FALSE	FALSE
Catonella morbi (SP76) 	0.0715349221045494	-0.14168031805498	0.19513847669284	0.279216768070206	0.366585428547492	-0.507420521461506	0.713928278990432	0.611859789754123	1	1	FALSE	FALSE
Leptotrichia buccalis (SP82) 	-0.518413934536976	1.03821739522807	0.644516733524799	0.914229727395698	-0.804345190080358	1.13561981646076	0.421197645937735	0.256115711685739	1	1	FALSE	FALSE
Campylobacter showae (SP9) 	-0.0134579005185094	0.0283053271911369	0.132331463097498	0.190587516895829	-0.101698418527981	0.148516165445442	0.918996057470856	0.881935429246652	1	1	FALSE	FALSE
Prevotella intermedia (SP92) 	0.227525919413602	-0.453662312673086	0.128736632103228	0.185513050916367	1.76737511069234	-2.44544688598543	0.0771654283756435	0.0144672756213117	1	1	FALSE	FALSE
Streptococcus sanguinis (SP95) 	-0.0260567050204963	0.0535029361951102	0.243184805218971	0.347045468469575	-0.107147751262806	0.154166935044711	0.914671765155797	0.877478112480304	1	1	FALSE	FALSE
Granulicatella adiacens (SP96) 	0.158579270132632	-0.315769014111145	0.408902851938786	0.581168629771402	0.387816493283768	-0.543334581282115	0.698151839075269	0.586899458596014	1	1	FALSE	FALSE
Enterobacter cancerogenus (SP97) 	-0.808042844122295	1.61747521439871	0.621913947751809	0.882274243349881	-1.29928400390976	1.83330209012717	0.193846481877305	0.0667576587406286	1	1	FALSE	FALSE
Treponema socranskii (SP98) 	0.0727799401230755	-0.144170354092033	0.208584173730658	0.298195236875436	0.348923596749269	-0.483476381456278	0.727146669539773	0.628757525892113	1	1	FALSE	FALSE
Prevotella sp._HMT_305_nov_93.456% (SPN122) 	-0.691700729676963	1.38479098550804	0.889072040290685	1.26000817889121	-0.778003017000522	1.0990333306619	0.436567234610567	0.271753527875131	1	1	FALSE	FALSE
Actinomyces israelii_nov_96.838% (SPN134) 	0.52899975096963	-1.05660997578514	0.858357143273243	1.2165779539165	0.616293293666029	-0.868509882481121	0.537700964219608	0.385115264611991	1	1	FALSE	FALSE
Streptococcus sanguinis_nov_97.782% (SPN153) 	-0.158773237120565	0.318936000395247	0.272140830274574	0.387937936590892	-0.583423064302302	0.822131506905414	0.559608535024284	0.411002055449024	1	1	FALSE	FALSE
Bergeyella zoohelcum_nov_93.004% (SPN8) 	0.593287443347795	-1.18518536054147	1.45566354977522	2.06120955816438	0.407571820726986	-0.574995082788645	0.683588055999716	0.565294622557901	1	1	FALSE	FALSE
Veillonella dispar_parvula (SPP11) 	0.360196556427697	-0.719003586701277	0.145791941406119	0.209583214301525	2.47062048117139	-3.43063536408433	0.0134878876196588	0.000602169446621889	1	0.0560017585358357	FALSE	FALSE
Serratia marcescens_nematodiphila (SPP15) 	-0.435056773801673	0.871503073757462	0.359686871266649	0.511618354417571	-1.20954310139151	1.70342417591641	0.226454262629158	0.0884887165967801	1	1	FALSE	FALSE
Fusobacterium nucleatum_nucleatum_subsp._animalis (SPP21) 	0.246448087448048	-0.491506648741979	0.331413898598519	0.471669756108863	0.743626288729068	-1.04205674070936	0.457102594497278	0.2973853731587	1	1	FALSE	FALSE
